Basic Information | |
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Taxon OID | 3300025379 Open in IMG/M |
Scaffold ID | Ga0208738_1000177 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE21Jul09 (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 19938 |
Total Scaffold Genes | 30 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 25 (83.33%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
Associated Families | 3 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | Crystal Bog, Wisconsin, USA | |||||||
Coordinates | Lat. (o) | 46.0072 | Long. (o) | -89.6063 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F043746 | Metagenome | 155 | N |
F056271 | Metagenome | 137 | Y |
F094498 | Metagenome | 106 | N |
Protein ID | Family | RBS | Sequence |
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Ga0208738_100017728 | F094498 | GGAGG | MNNEPLNAYKELMDFLEDGEVVEGIVFGEYGWGGYGEEEDHKVQQEHQGKLMSIEEAKPLMDGWSFDGGYGAPECNATYVWTNKRCIWVTQYDGSTCLDSMPRHPMACMPDMPGD |
Ga0208738_100017729 | F056271 | GGA | MKTKEEIKEEIIELYGANKALSKAAFLLHEQQTEITKKLFALNNMLREMEDKDE |
Ga0208738_10001774 | F043746 | GGA | MNFKILSIETDGDLITHAEFFVSLTDGTNTVEQQGTHQFANPVLKTPLKEVKEQNIIDWIIAETTQDGVNIIQSNLEKQLVQKDKTALPWVFNTFKPFGG |
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