NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208738_1000177

Scaffold Ga0208738_1000177


Overview

Basic Information
Taxon OID3300025379 Open in IMG/M
Scaffold IDGa0208738_1000177 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE21Jul09 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)19938
Total Scaffold Genes30 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)25 (83.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameCrystal Bog, Wisconsin, USA
CoordinatesLat. (o)46.0072Long. (o)-89.6063Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F043746Metagenome155N
F056271Metagenome137Y
F094498Metagenome106N

Sequences

Protein IDFamilyRBSSequence
Ga0208738_100017728F094498GGAGGMNNEPLNAYKELMDFLEDGEVVEGIVFGEYGWGGYGEEEDHKVQQEHQGKLMSIEEAKPLMDGWSFDGGYGAPECNATYVWTNKRCIWVTQYDGSTCLDSMPRHPMACMPDMPGD
Ga0208738_100017729F056271GGAMKTKEEIKEEIIELYGANKALSKAAFLLHEQQTEITKKLFALNNMLREMEDKDE
Ga0208738_10001774F043746GGAMNFKILSIETDGDLITHAEFFVSLTDGTNTVEQQGTHQFANPVLKTPLKEVKEQNIIDWIIAETTQDGVNIIQSNLEKQLVQKDKTALPWVFNTFKPFGG
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