NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208871_1000057

Scaffold Ga0208871_1000057


Overview

Basic Information
Taxon OID3300025381 Open in IMG/M
Scaffold IDGa0208871_1000057 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE19Jun07 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)37427
Total Scaffold Genes52 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)39 (75.00%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Associated Families6

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Sediment → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameCrystal Bog, Wisconsin, USA
CoordinatesLat. (o)46.0072Long. (o)-89.6063Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F033683Metagenome176Y
F035607Metagenome / Metatranscriptome171Y
F045505Metagenome152Y
F067354Metagenome / Metatranscriptome125Y
F094805Metagenome / Metatranscriptome105Y
F096502Metagenome / Metatranscriptome104Y

Sequences

Protein IDFamilyRBSSequence
Ga0208871_100005710F033683N/AMNYDNIAKEAKLAAADTGWFNGTSESILTRLDRLQEILDGARMAASVPTASNHELERYASIITELGAEKEQLEKLASEYVEFDTEDYLNSLPGGTIAKEYRISSAGTSDLGEDDGSLLYRTASSIEGEYADADWINFVTAGAEIWVEDQSTRLLDSQLDTREAAVYYVEKKTFPILDTVKRASIIDNFVDNVEICRRAKNEGTHFQNVKSASANKLSASFAQEAVDYAFGENNWF
Ga0208871_100005717F045505N/AMKKATITISYDARDAQSDELASQEISETIAGLLNSLRTQVNGVQVSVKIQNNKENK
Ga0208871_100005732F096502AGGAGMEPRLNIKVAEIFDNANPVDADFQAPDANGQFPQWLGDFIDQNSNHAQKNWDAYAEQRQGLGDQIQRYVDESHMHATDENPAQDPTLMAMNPSLVNSPDLSDVPAPKAASKFASQANGFRNSQAHPDFTLGLVAKANTGTIVNSRVVAETPTTKIAGTVIAVGDAEFAVVWDDRTASVERKRDYELVIAQ
Ga0208871_100005737F067354AGGAGMSTLFNNEPPRILPKKAFNKRSFLDIVSPLIKLDIIKEGEGLKCRNAQKLVLTNSIYEKISE
Ga0208871_100005745F035607AGGAMAPRTVSKSSDVSSESTPVPVVDLGGHYEEHKADPADRAAALQKRPPAAFKDMQDIQVADWIENLMEGSTVFTSDKGSFKLAGAGYHNSIQPIAEEIRKDPYLLRAVQRGRIAYITADDAMEKIAGLKDESSTSESHMDHLRESLSAGASENTGMYKIPLPDEAEPKGPAQTWEQIWSNSTSTAKPKNV
Ga0208871_100005746F094805AGGAGMSDEIKNTVKAEEAEPLGAVLPQNTVLSGTTIYNEPWFSVWVPQTFAGAVASGYAAPTLSGNGWAGTNNTGFAFQNDQYNTTVRGF
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