NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208250_1015180

Scaffold Ga0208250_1015180


Overview

Basic Information
Taxon OID3300025383 Open in IMG/M
Scaffold IDGa0208250_1015180 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE18Aug09 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1363
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameCrystal Bog, Wisconsin, USA
CoordinatesLat. (o)46.0072Long. (o)-89.6063Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009720Metagenome / Metatranscriptome314Y
F022104Metagenome216N

Sequences

Protein IDFamilyRBSSequence
Ga0208250_10151802F022104AGGAMTSTDITTIAYNAVFTIGATGTGIWYVFKHGVQNVLRQEFNDIKDIKHEVTPNSGGSLNDAIRKQVIPMVETLVERQQNIAVEVAVLNGRFEQHIMEHNA
Ga0208250_10151803F009720GGAMRNPLKKKYIHETTGDVLTFSEQVSWWVQGIIRNWFFVIGWTLVTIVWWIKPHWFHDDASYVKWMNLASWLAVTVELIIGIAMIGQTKRDALIIRHILKLEKQEIEHLQDLLEEDK
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