NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208503_1002284

Scaffold Ga0208503_1002284


Overview

Basic Information
Taxon OID3300025388 Open in IMG/M
Scaffold IDGa0208503_1002284 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE31Jul07 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2877
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (14.29%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameCrystal Bog, Wisconsin, USA
CoordinatesLat. (o)46.0072Long. (o)-89.6063Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008991Metagenome / Metatranscriptome324N
F010534Metagenome / Metatranscriptome302N
F017786Metagenome / Metatranscriptome238Y

Sequences

Protein IDFamilyRBSSequence
Ga0208503_10022842F010534AGAAGGMSDKVGEKQEAIMNLIDQQIKESLKDQASRLEILQDRIKDAIDISTTEHSQGIKQVMLFVTKAHVQAWITSLKHKVDTAGDCEICDLEKILGEESLEIAEAVKVALSNRNEETRNRILGELLEKTITKIEALSVRASPSS
Ga0208503_10022843F008991N/AMHLTVKITEQVEKKLEVVLKGKYDNKTIWMYYKVSLQLLRDIIENLITCHHTTYPLAEKDLYYEQNKVQIVDWIQWIQNRTSSDKLVDLDKLLSKLIKDKAENLVEALTEENPSDRMTTLSMLQMSIQMALFTEVQQLLRSPIVIQFCEENGWAV
Ga0208503_10022846F017786N/AMDKGVKFVMNREEMKSLSAKQILIAREKLEHGEHVLLVNEIFISPISFQNAMEIVRNIKEKVKLREFELQF
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