NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208257_1031355

Scaffold Ga0208257_1031355


Overview

Basic Information
Taxon OID3300025389 Open in IMG/M
Scaffold IDGa0208257_1031355 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH10Sep07 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)785
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameCrystal Bog, Wisconsin, USA
CoordinatesLat. (o)46.0072Long. (o)-89.6063Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000934Metagenome / Metatranscriptome828Y
F068572Metagenome / Metatranscriptome124Y

Sequences

Protein IDFamilyRBSSequence
Ga0208257_10313551F000934GAGMANLTTILSIAEQVTINDQRFVGQTISRNQRISTSEIVTVVPFQFEMKPMNYLLYSQNRDLLANLRYFDKSMEQYLNFASTGWQNYINYQGDMTGAQIASCQWQTASANKNLVLGNLPSISSTAVIVKAGDFCQVGRYTYIATQDVLRGSGTTVTIPVHRNLLTVLVSPINAVIGQYGTTVALGGNTYTGCTFPVILQQYPTYTLV
Ga0208257_10313552F068572N/AVMNSSSGGVTYNGPYIANMSAIDTQSATQFLARNQVAVWSANQAAQRGLPQSR
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