NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208035_1002405

Scaffold Ga0208035_1002405


Overview

Basic Information
Taxon OID3300025406 Open in IMG/M
Scaffold IDGa0208035_1002405 Open in IMG/M
Source Dataset NamePeatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_11_10 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2968
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location NameUSA: Minnesota
CoordinatesLat. (o)47.5028Long. (o)-93.4828Alt. (m)Depth (m).1 to .2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001759Metagenome / Metatranscriptome640Y
F023640Metagenome / Metatranscriptome209Y

Sequences

Protein IDFamilyRBSSequence
Ga0208035_10024052F001759GGAMSLKSALQDLRETTLAAVSGLLAKLAYLGSLRRSEGGYLHWGMALVHGEEASNRALKTAHSEVLSTVLRTPISALAEDLQESSQDSKKTAAAYVADMREQFSELLPSPEDSASARHLNSVLIALSSLEGSQKRATPSTSLRPQPPVR
Ga0208035_10024055F023640GGAGMNLAIVLVTAAVLALGMILRLAVTQSLQAKRSASLAGAIRPIDIEAFRNLTDPAEESYLRHRLPPAQFRAVRRERLRAMAAYVYIVGSNAAVLVRVGETARATGDARLAEAAQQLVNDALLLRRNAHVALA
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