NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208378_1015032

Scaffold Ga0208378_1015032


Overview

Basic Information
Taxon OID3300025407 Open in IMG/M
Scaffold IDGa0208378_1015032 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE24Aug09 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1512
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Cryptomonadales → Cryptomonadaceae → Cryptomonas → Cryptomonas curvata(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameCrystal Bog, Wisconsin, USA
CoordinatesLat. (o)46.0072Long. (o)-89.6063Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F050935Metagenome144Y
F100346Metagenome102N

Sequences

Protein IDFamilyRBSSequence
Ga0208378_10150322F050935GAGMGISWDNRYLGLFGDHIVPAILYRYTQELRRPDLVDKKGNPLIKNARLKAVWTRLANRMATVVADTSMVTISPQYATHFYDMYINGKENAKLTGDRMKILMLSLPFMVRDLIAPEVTWDISTYTLILM
Ga0208378_10150323F100346N/AVLSQVEFINAEIDRAPRGTRLHGLAHVSDPSDQIVEVLIQCMEWNIMTRRRSIPESELPELHQAAVNLLELLKKNLPDKCGEESGWNFEKAHSILHKVREIVLWGNSDNTSCQGAEHAHIELIKSVAHLTNNKDVFLCILRFHTRVGFLRHYERLLSELEGFPDAPGDKYAADSKILCDRNFNVACETGIRYPSLPAMLNRDAMLIRISVRSILRVIPCYPGLSHVFNGIS
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