NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208036_1000337

Scaffold Ga0208036_1000337


Overview

Basic Information
Taxon OID3300025419 Open in IMG/M
Scaffold IDGa0208036_1000337 Open in IMG/M
Source Dataset NamePeatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_11_100 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)30782
Total Scaffold Genes31 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)22 (70.97%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location NameUSA: Minnesota
CoordinatesLat. (o)47.5028Long. (o)-93.4828Alt. (m)Depth (m)1 to 1.25
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011725Metagenome / Metatranscriptome287Y

Sequences

Protein IDFamilyRBSSequence
Ga0208036_10003379F011725AGGAMYRLERQNLAPALHRFRSVRLLSALALLTLWAPTSALAWGGQVRLIRRYQSGQKMVYATKMHTKAVIHSEPPELQNFLPPLPTNFSVQQQNTVTVKAVHSDGSADIENHFDKFEFQSDLADRVPANFRDPAVSAQQEISEHVAGQDIVAHFDRNGQLLGFEGGEGLFEQLDPAYRESLRQALRFFLQQVGGDSLYPEHPVKPGETWKRKFDSPASAAYPYNVEGENTLRYVGKTKVGGVKAAVVEFSFVDVLRPSPDALGKAHPLAQLESHGLGVDMRIDGQGKGRVLLALDDGRVLQNHGTVHQTLSARLKSPAPLPFTNSQTLKLEVQSDTEMDVEGSDR
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