NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207958_1000674

Scaffold Ga0207958_1000674


Overview

Basic Information
Taxon OID3300025421 Open in IMG/M
Scaffold IDGa0207958_1000674 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH27Jul07 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9936
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (35.29%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameCrystal Bog, Wisconsin, USA
CoordinatesLat. (o)46.0072Long. (o)-89.6063Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F048735Metagenome147N

Sequences

Protein IDFamilyRBSSequence
Ga0207958_100067415F048735AGGMEYNGLNLEPPKDTTYGLSFLETVPQFIRELTAYRLTRGEFGRRERYKRGIKLEHTDLKNPAQHMVNCFQLIYGNDVLLHSQGIPNNYALDIIDLFCNENDWGIAGCASSGKTFSVAACIIIDWLCAPDCTSTYVASTSLDASEDRLWGKVCTLYRIAMRNLQAQFGKDTSIGNLVEYRRMIVFESIDTRDTERDYTNAIKALAFPRGGEGKRSVENTRGRKNARMRLFLDELAEMDLYALDTRVNLGANPDFIFGGMANPSNTANNPHTELCQPDDPMEWESVNRYTHKWKTRTGVALHLSGEDSPNFKAPDAEIPPFDRFLTIQGEAATLKRCYGNKNALEYWRNVYGWWPDSSVELTVFSKQFIQGCDISWEPAWSDRTKVVCGFDPAFTAGGDRCAATFCRYGPNDTGRRVGFYLGTREYNSSVGEVFEESIAMQVVKDCLEYGVHPRDFGLDISGDGGKMLRAIIIEWGRYHPEAMFITPISSMGMPTDRKISNLDKRTAKEAYDRRVTESWFQVHTAMSTQSLVGIDVERHTALVSELCSRLYFHKGRKVAVEKKLDMKQRIKKSPDLADSLTYAVEMLRRAGLEFTFEDQSAESLDIIEIRDWEDRLIHSKNNAQEEIENDEWGYAGKSCDEDGF
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