NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0207958_1004911

Scaffold Ga0207958_1004911


Overview

Basic Information
Taxon OID3300025421 Open in IMG/M
Scaffold IDGa0207958_1004911 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH27Jul07 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2716
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameCrystal Bog, Wisconsin, USA
CoordinatesLat. (o)46.0072Long. (o)-89.6063Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F029090Metagenome / Metatranscriptome189N
F029723Metagenome / Metatranscriptome187N
F032529Metagenome / Metatranscriptome179N

Sequences

Protein IDFamilyRBSSequence
Ga0207958_10049111F029723N/AMTSSDSSNGRQKVLMTPMQLSVYWRKVAAEALKLLNDIHLDEDHDSEDNLSAYKLFHEQLRELKRIDPVRPFNQLTMGPTHPIVTSSCNCTLCDPSSEDIDSEDSTESVLI
Ga0207958_10049113F032529N/AMAESRRLIDVTDTERARMKAILEEQLPGEEYAATRESCLRNLSVTKHARFHALIQERYPGDSEEQIRRRALAWEKLYEIRQVPVKENASSKETSVENTSCEVTSSTDTISKNETKK
Ga0207958_10049114F029090N/AMKQKSKVATFTPYTKTECQRLRLIMPGVPSKKQEFIRLLDRINAPSYVDLMISLLCKAVNNIAPYEDDQYNTVRYRKIYDLLSIIKNKRPTWKLAYIAQDIEAFKQKADVLNKVYRGVSFFVRQEMKQENHFRLIYETINSIDLKKGYTKNFKWFKKLKNNLKFVYGRSPKWALRYQESALPDLGNLTENDFN
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.