NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208646_1005786

Scaffold Ga0208646_1005786


Overview

Basic Information
Taxon OID3300025425 Open in IMG/M
Scaffold IDGa0208646_1005786 Open in IMG/M
Source Dataset NameSaline lake microbial communities from Ace Lake, Antarctica - Antarctic Ace Lake Metagenome 02UK8 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4082
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (100.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameAce Lake, Antarctica
CoordinatesLat. (o)-68.4725Long. (o)78.188Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F021087Metagenome220N
F022159Metagenome / Metatranscriptome215N
F025231Metagenome / Metatranscriptome202Y

Sequences

Protein IDFamilyRBSSequence
Ga0208646_10057863F021087GGAMFNMTLEQHLEEMGIRSPKTLIDTLESILDPRWQYQQKGYYNDPRDRNGEVPF
Ga0208646_10057865F022159GGAGMTLDTRMVSMVLAENANEFITVKFLTKDNEERTYNGRLNVKKYLVGGERGRKAADVLKAHNLIPMFVGKDGEKPKYKSFCIDRVLAMKAGGRHIHGMGNEIV
Ga0208646_10057868F025231AGGAGMEVREKYYEVYIDGDLYHEGSFEDCRYYALHALDDDCAEVYEVTVTEEKVVI
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