NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208739_1008424

Scaffold Ga0208739_1008424


Overview

Basic Information
Taxon OID3300025426 Open in IMG/M
Scaffold IDGa0208739_1008424 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE27Jul09 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2047
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameCrystal Bog, Wisconsin, USA
CoordinatesLat. (o)46.0072Long. (o)-89.6063Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F066480Metagenome / Metatranscriptome126N
F075720Metagenome / Metatranscriptome118N
F076862Metagenome / Metatranscriptome117N

Sequences

Protein IDFamilyRBSSequence
Ga0208739_10084241F075720GAGMVNQEDRNFKLFIGGLEMVLGLTKTAITILEYNLSGIVGLFFGIEQWSIVISFYITAHERSLVRHKDTVTEQGAKLANHLTIPLIKNMETLRDMCREGRSVETLNKLKAFENHLIYLIQKPRDQWAQWQLKEHIYSVIESEFPKIIQKLQSSILDHSWELINGICPSLL
Ga0208739_10084243F066480N/AMDIFKEREDQVVSKLLFIQGGQPIYQYRQVLKLLKEMIQELEGYDKKPHLLDNINRYISSIKRRIGYCQIWTENWTQINVFSKEEKVLQELLKYILERMMSCLDTENKEERAKMTYCLKIETFLKIHQTRKQSIENNFILEVTE
Ga0208739_10084244F076862N/AMSDPSHNSTVEEITKGIRTLDTDNQEVENLKEIILQGVKSIGTVTELISQLVYEEDKRRSQFKDILKMVKNLLESNSHKTHTIARQYGRKHPPLTGPLARMLMDLADLEDLVSCKEIKEMKEVIEDLDNW
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