NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208618_1000004

Scaffold Ga0208618_1000004


Overview

Basic Information
Taxon OID3300025435 Open in IMG/M
Scaffold IDGa0208618_1000004 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE18Jul08 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)131144
Total Scaffold Genes193 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)44 (22.80%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales(Source: IMG-VR)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameCrystal Bog, Wisconsin, USA
CoordinatesLat. (o)46.0072Long. (o)-89.6063Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016038Metagenome / Metatranscriptome250Y
F096706Metagenome104Y

Sequences

Protein IDFamilyRBSSequence
Ga0208618_100000463F096706N/AMAKIYSAVASGKNMLAVFDITNGITSYKINLGNVEIVNGPVVTQDKMTVVVKDNQGKLQGKVYSLPKGILSYSFQIK
Ga0208618_100000485F016038N/AMVADIDMLGPLPKSLIDFSSLPKNSFNSVFYGYNLKTVLDDILLCTFVDETEDGSSIIRNGLHVPVNTDTKAWRIGEVILAGPNVRYAKKGEYVCFPNNLGVPVANIDIEGYGTLKKGIFLNEQRIFGICSLRGDDNESVAAHLKKSAAKQRRRNKV
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