NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208618_1007388

Scaffold Ga0208618_1007388


Overview

Basic Information
Taxon OID3300025435 Open in IMG/M
Scaffold IDGa0208618_1007388 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE18Jul08 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2837
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (37.50%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameCrystal Bog, Wisconsin, USA
CoordinatesLat. (o)46.0072Long. (o)-89.6063Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F041008Metagenome / Metatranscriptome160N
F055421Metagenome / Metatranscriptome138N
F069678Metagenome / Metatranscriptome123N

Sequences

Protein IDFamilyRBSSequence
Ga0208618_10073882F041008N/AMPIKDEAEMARTLNKLIIVDIEEGYRVPVRRKRQEISDMLAENRYNDPEVWQALMDYDILLGELLQRYEEVENVMEHLFEYYLTSEYSQKLRIPLKGAKPVINDRLHFQNKLEEVLEQRSSVEKNKSVIALHSVTHTVERELRVVGDYNMVTLYKIDNELLNLRMMYEYLIENFNPHVVTKG
Ga0208618_10073884F055421N/AMEEFTNPYKETNIEVHLVWIAIATTANYIPMEGIVGKCIRSYLALVVWLLIILNRKRGLWQRGAILIIYLKLNSMTRIIENLSYSMTVIKIGMLGVSLEQIICNNTIESVKMVILLHFMTVAICLPSGEEIESNLIKLTIGY
Ga0208618_10073888F069678N/AMSNQEQLAEGTSLTETLVDTVKTELIYKLKLCIDEINTEVDEVTYENIWSYEKMNRILANLRKLDPNWTIDGGFDKPGMWDLTDMLEGILKHRIIDIEIDDQDVENLDLESYNEFHKALIDMRKRDPGWSINGTRRNLSKPIKCRNIGLPTNSSESESENEHLDDRINNGTAHTDR
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