NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208618_1012033

Scaffold Ga0208618_1012033


Overview

Basic Information
Taxon OID3300025435 Open in IMG/M
Scaffold IDGa0208618_1012033 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE18Jul08 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1992
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameCrystal Bog, Wisconsin, USA
CoordinatesLat. (o)46.0072Long. (o)-89.6063Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F023037Metagenome / Metatranscriptome211N
F023279Metagenome / Metatranscriptome210N
F035195Metagenome / Metatranscriptome172N
F039492Metagenome / Metatranscriptome163N

Sequences

Protein IDFamilyRBSSequence
Ga0208618_10120331F039492N/ALELGHKTNAIRMLSDLDAPLYMHILTLELCKMTQLIRSHVKEQDKESIAHKAYHIIKEIKKKRPKWIFHQNPRAEYNFEKKSLTDGQVYDRELLKIKDCRNTCGIVNKVNVKRSFSQNKYVFEELKQMQSMGQEKTPRWVFAYKIPSLPIIKDIDFNFK
Ga0208618_10120333F023037N/AMNESQYNPSRLTTPAAVKLELISEIQASLNAIDGEESFGYNIQKVMRLYHAIEKLKQIEPYWLFEVRVISAAGTLV
Ga0208618_10120334F035195N/AMEDRTLKTEAEVIELVQNSLNNVETEKSFEDNYEVMLKLYCAIKRLKSIRPKGTFRAVGVSFKQVSTPQK
Ga0208618_10120335F023279AGGALFRFHVLTNRKDLKEKVTTEKMADSSKENTEAIVDTIKSELAIGFKNCIDKIDTERKVVDRYNWEIYVKINKILHNSRRLDPQWTIEGDIGNSWSLNSILERDFKSKILNIDLSEIDSIDLEGYEELHQSLKDLRVNNPGWSINKTRRSSPILLTPT

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