NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208103_1026618

Scaffold Ga0208103_1026618


Overview

Basic Information
Taxon OID3300025436 Open in IMG/M
Scaffold IDGa0208103_1026618 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Crystal Bog, Wisconsin, USA - MA7.5M (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)795
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameCrystal Bog, Wisconsin, USA
CoordinatesLat. (o)46.0072Long. (o)-89.6063Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001477Metagenome / Metatranscriptome687Y
F003863Metagenome464Y

Sequences

Protein IDFamilyRBSSequence
Ga0208103_10266181F001477N/AILFYEVVEPDGGNTWGGASAEHCIEWLSLAPSGSRVLVSAWDSDEEDAHLVGQTIDITDIVRAASL
Ga0208103_10266182F003863AGGMKEVSGKQAIHYRNYRRARDKALVRLAHLYPDTYKQLLNEQRSFDEQEGKTWSIAGDSKLTIAIHTRANSVPTFTGDTGDTREDESDNGGEE

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