NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208424_1001645

Scaffold Ga0208424_1001645


Overview

Basic Information
Taxon OID3300025445 Open in IMG/M
Scaffold IDGa0208424_1001645 Open in IMG/M
Source Dataset NameAqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_0.3_>0.8_DNA (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2506
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Moraxellales → Moraxellaceae → Acinetobacter → Acinetobacter baylyi(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Delaware Bay
CoordinatesLat. (o)39.283Long. (o)-75.3633Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007260Metagenome / Metatranscriptome354N
F010835Metagenome / Metatranscriptome298N
F013879Metagenome / Metatranscriptome267N
F023575Metagenome / Metatranscriptome209Y

Sequences

Protein IDFamilyRBSSequence
Ga0208424_10016451F007260N/ALRNRRYLQLGRSASSHFPNLGFWRLLHGVNLIATSLQLGMTVLQGAMGNPSFIWQGSLVRCIPAAITDANNVINGGFQDNVQVRLLVKLADWRLADSTLVTVDATVWSADVGSTADRLLQESGSLILQENTDALQLTFGKMIPVVGRTLTYDGRSLRIISAKRDGTGAYYVLELGAKTK
Ga0208424_10016452F013879GGGGGMTPTVTVDTSRFDAAWKEYLPKTKRSLADAVNARTFFLMLRLYCLLPPKSPQAARNKILDYYNRPVGSPAFDKKTGKKVGRSRQLRLVHLIAQAKNAKAGNEGLYGQKMKDAAAKLRRRAAGSVGYLKSCVTKGIKKLSPSFQQFGGTRRAKKGSTQVRSVAANQALVNLANQYGLPYENVSMHRGSSAYAYNAKAGFNPHSHVRMNIGLADDQIGKVESIYSKAMQQAYDDEARELEIHIAAKLAEAFDGSESKGIVVQ
Ga0208424_10016453F010835AGGAMNGVAMRTERALADWLAAQDWSASPLGTPACMTSYGHGAFNDPDLEDRMPDFPRIVIRSSTAVPVHPIDRTCELDVTATLQLSADDTSESDALLTVAAFENILQPLFVDDNISDLNTGDDDPSGGFTAFFATPTDFGVNDTSERARTFSRSMTIFAAANANT
Ga0208424_10016454F023575N/AMAVSKGLALVYGAKGTITLYTPAGVALTTGAISTIESYDATHEADVEQIKNSAGEVVAQVSANERISLNVTFIPSAASFAQAKLAAGLPAVNGYATIAASDGVTVGGVSIDGDYVYSGGGSVKFTSSGKVMVTVTVTKYPSLAGNASTFTL
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