NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208426_1014267

Scaffold Ga0208426_1014267


Overview

Basic Information
Taxon OID3300025451 Open in IMG/M
Scaffold IDGa0208426_1014267 Open in IMG/M
Source Dataset NameAqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_0.19_>0.8_DNA (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1165
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Delaware Bay
CoordinatesLat. (o)39.283Long. (o)-75.3633Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001923Metagenome / Metatranscriptome617Y
F003583Metagenome / Metatranscriptome478Y
F019449Metagenome / Metatranscriptome229Y

Sequences

Protein IDFamilyRBSSequence
Ga0208426_10142671F003583GAGGMFAVILLTAFAGLSALASAYIAGFVLDQLQNTEALALIVTDGGIKSDSKDLERNLSWATLALKSVRDLGWALAVGCLGVGVAVFLRSRRQKAS
Ga0208426_10142672F001923N/AMSAMNPEEIPHEVKDGIVASVLGGLAMTARLLLSTEPVSPGWVVRRVLAAAITAAIVGYAIQDHIQSPGLRMGAVGAAGYAAPECLDYLMKYIKARGDKEVGAVIGKGKPHGKGKAKRR
Ga0208426_10142673F019449N/AMTTETFTTIVVPGIASLAYFSAGVACFIAHRPALAVMWLCYSIANICLLSTVLRK
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