NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208850_1000116

Scaffold Ga0208850_1000116


Overview

Basic Information
Taxon OID3300025457 Open in IMG/M
Scaffold IDGa0208850_1000116 Open in IMG/M
Source Dataset NameArctic peat soil from Barrow, Alaska - NGEE Surface sample 210-2 shallow-092012 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)27939
Total Scaffold Genes28 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)16 (57.14%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil → Arctic Peat Soil Microbial Communities From The Barrow Environmental Observatory Site, Barrow, Alaska, Usa

Source Dataset Sampling Location
Location NameBarrow Environmental Observatory site, Barrow, Alaska
CoordinatesLat. (o)71.2999Long. (o)-156.61Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002821Metagenome / Metatranscriptome528Y
F020047Metagenome226Y

Sequences

Protein IDFamilyRBSSequence
Ga0208850_10001162F020047AGTAGMSILGRKLHGGITGAGISVALALLASPLAAQKTDLTLGGAIITFPAPTATDYINGFVNSATGVTYTLNATQGNVSHTTTISIRSTSANLGGGKIIGDLQWRRSDLATWNSISLTDTQVEQRVMVRNGLNDPWSNTIFFRMVLTWATDAPATYSANYQITLSQTVP
Ga0208850_10001164F002821GAGMSGSRTTSVRTLALGWVVLLSACLKSTEPQPSLIQLNGSWNYTGVQTVPVRETLTGTLTISRESGTSFQGQLVLQGVNSQTQQQRLLSGPVSGSESGTDVIDFDADLEATTRRHVGQIVADTITGTWYSSSDGAMSSGTFRVERETR
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