NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209120_1011573

Scaffold Ga0209120_1011573


Overview

Basic Information
Taxon OID3300025462 Open in IMG/M
Scaffold IDGa0209120_1011573 Open in IMG/M
Source Dataset NameHot spring microbial communities from Joseph's Coat, Yellowstone National Park, USA - JC2_E (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1930
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Adnaviria → Zilligvirae → Taleaviricota → Tokiviricetes → Ligamenvirales → Lipothrixviridae(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Microbial Mats → Hot Spring → Saline, Thermophilic Phototrophic And Chemotrophic Mat Microbial Communities From Various Locations In Usa And Mexico

Source Dataset Sampling Location
Location NameJoseph's Coat, Yellowstone National Park, Washington, USA
CoordinatesLat. (o)44.376Long. (o)-110.69Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F075084Metagenome / Metatranscriptome119N
F080245Metagenome115N
F087442Metagenome / Metatranscriptome110N

Sequences

Protein IDFamilyRBSSequence
Ga0209120_10115732F087442GAGGMMREGLVKAGNLIIDCKPCYIAGTGFTKDNIYIISEGTAVFKSYDKIALITVSQEGVKTILLDIIDVRFLVERNENCMVTKL
Ga0209120_10115733F080245N/AVIFVWTAKVVMPGFRDEIFVSPALINSLGELTEDVYEVGMFAVPHAGHALLFLPTMVINLDDSLMKKLEETSIEDLNYPLNTIDHVFT
Ga0209120_10115734F075084GAGMRPCRKDLCLMYSLGVDYARLLEFTEQNPTGKLFRRAERAMIYGRRLLASWYGYDTRMLMETALKRILKKSIIFCNLMKRSGLESEYCRRYTYYDEVPCELTSEYDVEVAYADIMHMITNYNNETISQILTNMTKECSTYEVRG
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