NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209120_1016886

Scaffold Ga0209120_1016886


Overview

Basic Information
Taxon OID3300025462 Open in IMG/M
Scaffold IDGa0209120_1016886 Open in IMG/M
Source Dataset NameHot spring microbial communities from Joseph's Coat, Yellowstone National Park, USA - JC2_E (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1472
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Microbial Mats → Hot Spring → Saline, Thermophilic Phototrophic And Chemotrophic Mat Microbial Communities From Various Locations In Usa And Mexico

Source Dataset Sampling Location
Location NameJoseph's Coat, Yellowstone National Park, Washington, USA
CoordinatesLat. (o)44.376Long. (o)-110.69Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F063848Metagenome / Metatranscriptome129N
F085905Metagenome111N

Sequences

Protein IDFamilyRBSSequence
Ga0209120_10168861F063848N/AVAKKRRSQHDPMLSVIRYQEQLEKMAKAYEQSTTRRNQRAVNGFAILKQVQQTVRDYLNEASNAMKKPIIAQLGVEFLGVAMAYLKASNEDFSSYALTGRVAQIATLKATGIISSTELTCAQVGEIINGMLKKVSGMTEDPLTFTENDGVCEATPANPMPKLSIASPSTGYTVSLNDILKAKTPEEVLMGK
Ga0209120_10168862F085905GGAGGLFPSSRLSQFDYVAMNAYWLNMRLKYFTDPMLYAVATGIWVINLMDDVDIAETGTQKDFEYGLIYVYSNSRIDTLFVVALTHYFNVKREKEYYRSIPMDALQNVMKSLVDFMNDKLKILDKLKEKIDERIVLMMWNQLYIFVMGFLYGLYGRDAESVFHGVVARHLLPYSVLEVIRRHMK
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