Basic Information | |
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Taxon OID | 3300025462 Open in IMG/M |
Scaffold ID | Ga0209120_1054275 Open in IMG/M |
Source Dataset Name | Hot spring microbial communities from Joseph's Coat, Yellowstone National Park, USA - JC2_E (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 637 |
Total Scaffold Genes | 1 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Novel Protein Genes | 1 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Associated Families | 1 |
Taxonomy | |
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All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Acidilobales → Caldisphaeraceae → Caldisphaera → unclassified Caldisphaera → Caldisphaera sp. | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Microbial Mats → Hot Spring → Saline, Thermophilic Phototrophic And Chemotrophic Mat Microbial Communities From Various Locations In Usa And Mexico |
Source Dataset Sampling Location | ||||||||
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Location Name | Joseph's Coat, Yellowstone National Park, Washington, USA | |||||||
Coordinates | Lat. (o) | 44.376 | Long. (o) | -110.69 | Alt. (m) | Depth (m) | Location on Map | |
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Family | Category | Number of Sequences | 3D Structure? |
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F101504 | Metagenome / Metatranscriptome | 102 | N |
Protein ID | Family | RBS | Sequence |
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Ga0209120_10542751 | F101504 | N/A | YMRVTTMATLTYLAYQHYLRRLDYQTNLEIKNFNGSLIINLQPSVFDEIVNNTSFEANIMDKSYRYYNLRIPDNKPFQHPRIKELQHIKDKFDNMKVDIDKQQVEALANNFMTFNSVVRRYKIVNNFVKLTAILNNHKTATSEDYNFVAKMLLNNIIESELLERKGFTSTFKFNTFLFNVMLMSKYYGNIFHYSKLKTYLNVSTKTIYNYAK |
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