Scaffold Ga0208193_1000040

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0208193_1000040

Scaffold Ga0208193_1000040

Overview

Basic Information
Taxon OID	3300025463 Open in IMG/M
Scaffold ID	Ga0208193_1000040 Open in IMG/M
Source Dataset Name	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_17_10 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	93938
Total Scaffold Genes	75 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	53 (70.67%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter → Candidatus Solibacter usitatus	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location Name	USA: Minnesota
Coordinates	Lat. (^o)	47.5028	Long. (^o)	-93.4828	Alt. (m)		Depth (m)	.1 to .2
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F002889	Metagenome / Metatranscriptome	523	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208193_100004042	F002889	GAGG	MHRNAHVFCFLVLTLAGLSGCSSGPSAKESKKAETAPDKIQGKAQANPSESTAADAALNAGGPSMYLVDGLRRYRLFFKTAFQVESGKEYIAEGVYAQKAIDEIGDPDQGKNGYPLQSSCERVVKMAWPGLAFDVTDLHTSVLCARVKRYPARPVFLVTRLLPVAPSAASKQSGTAEPKKDAEAEDIPEVSVTADKQRALLIEGPTVETAPLWAPAGGTASCKLVIDKEGRISELETGAQLCESVPWTQFRYKPTVQRGHPVKVKTEVEVRFEPRK

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