NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208193_1012350

Scaffold Ga0208193_1012350


Overview

Basic Information
Taxon OID3300025463 Open in IMG/M
Scaffold IDGa0208193_1012350 Open in IMG/M
Source Dataset NamePeatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_17_10 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2569
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (57.14%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location NameUSA: Minnesota
CoordinatesLat. (o)47.5028Long. (o)-93.4828Alt. (m)Depth (m).1 to .2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004899Metagenome / Metatranscriptome419Y
F014291Metagenome / Metatranscriptome264Y

Sequences

Protein IDFamilyRBSSequence
Ga0208193_10123504F014291GAGGMEWFHSTEREQKRPNGGIASSHEIQSAFAEQRDYLYWIALLITGDEALADLAVVNAAALSANYSSVFRDWLIGWATYATVRAAVREVRDLVSTSASHFAESFSERCDDDVLSDDQIMSLRNVAPPDIIAALDPLARSALVLRGIQHASLADCALLLDVPRRIVAVAYCQALRWNRERLGAHGAPDEDQVDSRV
Ga0208193_10123506F004899GGAGMLRVEYYDVGHSVTMRLEGRFVGEFAQDAKDLVTRCKIPLRLVVNLSEVMFVDAMGEEVLLWLARIGGEFVAENCYPLHVCERLHLPMAPKCAGALPRAT
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