NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208479_1002066

Scaffold Ga0208479_1002066


Overview

Basic Information
Taxon OID3300025474 Open in IMG/M
Scaffold IDGa0208479_1002066 Open in IMG/M
Source Dataset NameArctic peat soil from Barrow, Alaska - NGEE Surface sample 415-3 deep-072012 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4032
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidicapsa → Acidicapsa dinghuensis(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil → Arctic Peat Soil Microbial Communities From The Barrow Environmental Observatory Site, Barrow, Alaska, Usa

Source Dataset Sampling Location
Location NameBarrow Environmental Observatory site, Barrow, Alaska
CoordinatesLat. (o)71.2999Long. (o)-156.61Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F034627Metagenome / Metatranscriptome174Y
F077209Metagenome / Metatranscriptome117Y

Sequences

Protein IDFamilyRBSSequence
Ga0208479_10020664F034627AGGMNKPTDKSVTDDCVRIKDLGYSSSHHIRMYGQRFDIVSDPFPDGNGIAVEVTTARQPKKRALRLPRTLLVGFKDLLPKVKIGK
Ga0208479_10020666F077209AGGAMLILLKELSVYKAMDEDYGAGLKGRAEEEAYKERERRRQEIKQEMHNLAAGSKSDPV

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