Basic Information | |
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Taxon OID | 3300025487 Open in IMG/M |
Scaffold ID | Ga0208105_1010528 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE16Jul07 (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 1964 |
Total Scaffold Genes | 6 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (16.67%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (25.00%) |
Associated Families | 4 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | Crystal Bog, Wisconsin, USA | |||||||
Coordinates | Lat. (o) | 46.0072 | Long. (o) | -89.6063 | Alt. (m) | Depth (m) | Location on Map | |
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Family | Category | Number of Sequences | 3D Structure? |
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F011134 | Metagenome / Metatranscriptome | 294 | N |
F018323 | Metagenome / Metatranscriptome | 235 | N |
F073465 | Metagenome / Metatranscriptome | 120 | N |
F100356 | Metagenome / Metatranscriptome | 102 | N |
Protein ID | Family | RBS | Sequence |
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Ga0208105_10105281 | F018323 | N/A | LDELELPLFEHILINQICKDLNTISTEINHDQEDERVFRKIFHKVRVLKLRNPEWKFKHRPKKSTYSRNRMIKEGRLTLSQEEARELANFKKETEIINQIETEKSFKENDHLFKLIKESRFTRIGRRNWLSFYRFPDLRKITIYNEKNFLCKVEGIRRKYSRLKWSIVL |
Ga0208105_10105282 | F100356 | AGTAG | MEYRTLKNEIELLESVQRLMNEVNTELDFNANYMTLLELFSTMKRLKIIQPKWIFKVARTPPLEENIFFRGKKKN |
Ga0208105_10105283 | F011134 | N/A | MSTFAKLEENYDSKETLVDTIKTDLIRQFKMCVDDINTEIIVINESNVTQYEKLNEVLIYLRRLDPKWNIDSNSDKPWSFKYMLEGILRCRILEIDISDLDTLDMDGYENFHDSLRDLRAEDPGWSINNTRRDFPILLTSEDLGLMNNHLESREK |
Ga0208105_10105285 | F073465 | N/A | MSNWRYRWRRPRPRYRPAPPAPRIEAVPIRNIEALLMAVIQAMNAIPPSDNFDTALATRLYYTVMCLRRFFPEWGVYLTPVHNSNRIIPHQMDDQGFSELENDSETEPLVSDV |
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