NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208105_1010528

Scaffold Ga0208105_1010528


Overview

Basic Information
Taxon OID3300025487 Open in IMG/M
Scaffold IDGa0208105_1010528 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE16Jul07 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1964
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (16.67%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameCrystal Bog, Wisconsin, USA
CoordinatesLat. (o)46.0072Long. (o)-89.6063Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011134Metagenome / Metatranscriptome294N
F018323Metagenome / Metatranscriptome235N
F073465Metagenome / Metatranscriptome120N
F100356Metagenome / Metatranscriptome102N

Sequences

Protein IDFamilyRBSSequence
Ga0208105_10105281F018323N/ALDELELPLFEHILINQICKDLNTISTEINHDQEDERVFRKIFHKVRVLKLRNPEWKFKHRPKKSTYSRNRMIKEGRLTLSQEEARELANFKKETEIINQIETEKSFKENDHLFKLIKESRFTRIGRRNWLSFYRFPDLRKITIYNEKNFLCKVEGIRRKYSRLKWSIVL
Ga0208105_10105282F100356AGTAGMEYRTLKNEIELLESVQRLMNEVNTELDFNANYMTLLELFSTMKRLKIIQPKWIFKVARTPPLEENIFFRGKKKN
Ga0208105_10105283F011134N/AMSTFAKLEENYDSKETLVDTIKTDLIRQFKMCVDDINTEIIVINESNVTQYEKLNEVLIYLRRLDPKWNIDSNSDKPWSFKYMLEGILRCRILEIDISDLDTLDMDGYENFHDSLRDLRAEDPGWSINNTRRDFPILLTSEDLGLMNNHLESREK
Ga0208105_10105285F073465N/AMSNWRYRWRRPRPRYRPAPPAPRIEAVPIRNIEALLMAVIQAMNAIPPSDNFDTALATRLYYTVMCLRRFFPEWGVYLTPVHNSNRIIPHQMDDQGFSELENDSETEPLVSDV
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