NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207928_1050629

Scaffold Ga0207928_1050629


Overview

Basic Information
Taxon OID3300025494 Open in IMG/M
Scaffold IDGa0207928_1050629 Open in IMG/M
Source Dataset NameArctic peat soil from Barrow, Alaska - NGEE Surface sample 210-2 shallow-072012 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)789
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil → Arctic Peat Soil Microbial Communities From The Barrow Environmental Observatory Site, Barrow, Alaska, Usa

Source Dataset Sampling Location
Location NameBarrow Environmental Observatory site, Barrow, Alaska
CoordinatesLat. (o)71.2999Long. (o)-156.61Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010341Metagenome / Metatranscriptome305Y
F012089Metagenome / Metatranscriptome284Y

Sequences

Protein IDFamilyRBSSequence
Ga0207928_10506291F012089N/AAGKPIRLLPSKQRASKPVEVWISDLYEKDGRLLVRYTVCNHGTEPYTIDTPLVYQLDGVRSAQSLYGLQNSQLGDEQAAKLKIKQETPVKVLDGQTQTARIAPGEEAVGVVALDMASSTQPTVLRFQFPGSKQSEDGLSNGQQMQIAAFLVR
Ga0207928_10506292F010341GAGGMADPFNVKPVYNALSQYIRNRADIGASRAMRDGVLEPSNPFERKAARPPRRWFVLLSLLAAMVFGFFFYFNNLL

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