NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208903_1008557

Scaffold Ga0208903_1008557


Overview

Basic Information
Taxon OID3300025502 Open in IMG/M
Scaffold IDGa0208903_1008557 Open in IMG/M
Source Dataset NameSaline lake microbial communities from Ace Lake, Antarctica - Antarctic Ace Lake Metagenome 02UKJ (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3798
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (87.50%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameAce Lake, Antarctica
CoordinatesLat. (o)-68.4725Long. (o)78.188Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000379Metagenome / Metatranscriptome1211Y
F041486Metagenome / Metatranscriptome160Y
F096209Metagenome / Metatranscriptome105N

Sequences

Protein IDFamilyRBSSequence
Ga0208903_10085571F000379AGGAGMKIDYENKHGMMVGYIDGSQNVSAVQTGWDIKPEALSKLLLDKYPTREDAMQVVDSPLLVPVFKKDDYCYVDEFGDVIESNLSWHKEVMRKDVGHLFLFMKGTWQYSDNGIDWWPAKEAFVDTSGTAFTNIREAIETGRV
Ga0208903_10085572F096209GGAGGMTVAIQTKSINDIYEEMTESYSLGEYLDGYTSYGEDALMTPDKFADRFQHICFGFGYREAEIIPQKHEIKEWCQEHLDHLENKFR
Ga0208903_10085574F041486GGAMIISTVFGFFLTIVGMNETAVAGYKILTTANNINEKTEKKEWKASLHEEVQQILKDAIREAGK
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