NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208188_1017339

Scaffold Ga0208188_1017339


Overview

Basic Information
Taxon OID3300025507 Open in IMG/M
Scaffold IDGa0208188_1017339 Open in IMG/M
Source Dataset NamePeatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_8_40 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2166
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location NameUSA: Minnesota
CoordinatesLat. (o)47.5028Long. (o)-93.4828Alt. (m)Depth (m).4 to .5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F032513Metagenome179N
F059581Metagenome133N
F093111Metagenome / Metatranscriptome106N

Sequences

Protein IDFamilyRBSSequence
Ga0208188_10173391F093111AGGVQILGNYQSTLSSSYYQQLVTLLQQAIQAGDFGGGQTFDQAALVAIQKQAQNFSTLPQPSAGQVVTDESFNRPLTLLAAQFAALLNESNAFATQLTALLSVLSKDTTLIDQLLAEAALQNWASTLPAMSGSTQIMWDFGAGYGPIAPATLSALWQYPSTGASYSSNPHLTTMLIAQQPGSYYFPAIYSGLAPSSNVSSVPVNNLIWTYAAGDAQVEVLDQ
Ga0208188_10173392F032513GAGMANPFYLIWQEGSTVLEGYSNGDWIDGQLTFPIVFPGVTTPAQALSLSSSASTNLTFETLINVAFYLTGSDAPVVQDVWPYLTDAYGNATPAVTGGVEISFDNGLTWNRFSNTVGLASTPSTWLALPQEAVGSVGTAGQIGAFDTAHMLVRYVIPPSVTLTRILDVQLQVDCDVV
Ga0208188_10173393F059581N/AETHGTLYPWKRNQISDVDPFMGRVEVVPTVDTTDTVYGFYSYFEPDVVYTSLDVNPVTNPSIKNTVICFYYRTTSSSLQEIYHQVFNDSGPIAGMTNDPNPPTWTGQVPSSGTVFAEMVVGVSFGIATFEMTDARTRGGGLAPAYQTIPQADNFWDLGYLDGRPYPVGGALVVYLPTRILNTMTRAVVAGIVNSVLPMGTIAAIRYYDPEGNESV
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Institute for Fundamental Biomedical Research
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