NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208148_1009948

Scaffold Ga0208148_1009948


Overview

Basic Information
Taxon OID3300025508 Open in IMG/M
Scaffold IDGa0208148_1009948 Open in IMG/M
Source Dataset NameAqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_20_<0.8_DNA (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2942
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Delaware Bay
CoordinatesLat. (o)39.283Long. (o)-75.3633Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006971Metagenome / Metatranscriptome361Y
F039398Metagenome / Metatranscriptome164N
F058532Metagenome135N

Sequences

Protein IDFamilyRBSSequence
Ga0208148_10099482F058532N/AMTLNQNGRRQIVKDEYDLFDNKARTSWEFICNYMNWEIVKNKEDYFEDYVCKIKGIYYPMELQVAAYWHNHSIDKLSNFYISKSKIDLLREYVDNYINVEAGCVFMNCVPNKFATINIKHIKDSYLMQNAQGEYFYKIPITENINYFTSGLIDAKCDCLENHLEIMQRSKGRMRHLEKEYNIRGFNGICCR
Ga0208148_10099483F039398GAGGMEYAADDINIGYMTCLMFINSEKTLVDKLNNITELQPIDHQGGVSFDLVLKSLPTYVEITMNHNGNFDIYTKTLKGETEFKDEVVETLINFLHIFYINMVDDENKLLLNAIDTTTYRKIAKRMHYREKFGEEI
Ga0208148_10099485F006971AGGAMKYQGIEYKKHQKVKFVIPTDLRIVDPQTKKILWRYGIIKFFSTNTKSAWILENGTKESIKISLFCVLPVN
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Institute for Fundamental Biomedical Research
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