NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208303_1000108

Scaffold Ga0208303_1000108


Overview

Basic Information
Taxon OID3300025543 Open in IMG/M
Scaffold IDGa0208303_1000108 Open in IMG/M
Source Dataset NameFreshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_2 Viral MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)33830
Total Scaffold Genes58 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)15 (25.86%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Chesapeake Bay
CoordinatesLat. (o)37.1Long. (o)-76.0972Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005937Metagenome / Metatranscriptome386Y
F010314Metagenome / Metatranscriptome305Y
F064620Metagenome / Metatranscriptome128Y

Sequences

Protein IDFamilyRBSSequence
Ga0208303_100010829F005937N/AMAKIDLDGDGKADVSISISQIITIAVMFASIIGSYYTLSAKIDSNEAEVKKLKYNEKEYTWKAQRELEKEVREITLEMRDFMKDLEYLQKDKKR
Ga0208303_100010830F010314N/AMENLKIYGFNAIALALSITEINPILQTISLLLAIGYTIISIYKKLR
Ga0208303_100010842F064620GGAMATNKNTSYRVHVQDTTEAEVSSVNIENGAMMRTDSALYMGHNGENVIVYPQTGGLNLGWARYNDTFYVGSDDNTKLLLSDGVEVTLPNNGGIVTRSHPSLNFYDVANQKFVGLNENDVYVVTVVFKKSAANANQTHLDFRLVDGDYERIDMALGFYKGNDETQNQHIMLQYYLDANALENGLTPKVTADGGNAKIWDIIFFIQRTQNGTLY

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