Scaffold Ga0208303

Basic Information
Taxon OID	3300025543 Open in IMG/M
Scaffold ID	Ga0208303_1002485 Open in IMG/M
Source Dataset Name	Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_2 Viral MetaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300025543 Open in IMG/M

Scaffold ID

Ga0208303_1002485 Open in IMG/M

Source Dataset Name

Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_2 Viral MetaG (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	6949
Total Scaffold Genes	13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	11 (84.62%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (60.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

6949

Total Scaffold Genes

13 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

11 (84.62%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (60.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location Name	USA: Chesapeake Bay
Coordinates	Lat. (^o)	37.1	Long. (^o)	-76.0972	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Chesapeake Bay

Coordinates

Lat. (^o)

37.1

Long. (^o)

-76.0972

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F025294	Metagenome / Metatranscriptome	202	Y
F035273	Metagenome	172	Y
F040601	Metagenome	161	Y
F046983	Metagenome	150	Y
F052627	Metagenome / Metatranscriptome	142	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208303_100248511	F046983	AGGAG	MKLPEYLNKESSHVTLGVNTMSLVGLSLTWGHMLGYLNLWFLPLTILTLLAGFGNEIRKRDA
Ga0208303_100248512	F035273	AGGA	MKQSYKVWDSQRNSMTRYTPKELYKIVVDYPKTNRQLEFIGMDRGSCIMQAEVAKQEGDDLMLMQTEEKITVYNKEKI
Ga0208303_100248513	F040601	N/A	MANVEYIIKVIEPDKEYLKPFVQPTLDDCRREAQEYLWSRPEGTKYIYVAARMRDETIV
Ga0208303_10024853	F052627	N/A	MAIRDDLITQITTNLSGHSNISISQELPFDSGGIPLYNKNMNVVYVDEQDIVVEQLYRTLDQGDVNQTTTTVNAYLSTDAKNQFNDINTVVANLLIARNVVTNVTDSNSDYESEITDDVITYTFEYNFITV
Ga0208303_10024856	F025294	AGGAG	MEASNDTAVQSDNIETVTDSANPVEQAEQSVSTETKSEINTTPSVEVRDGKTYVNGVRVYTRDDTNRIAANAKNEVQKNILNELNVDSIDQVKKVVSTLQEVSPEEGTSLNVDSLRDAVKKREATVEELKSQVNSLKTDLMLKDHMGQLQNAMPSNWSAQQKESVIKLMKADGMLAVEGDTFAIRNGNDFLTTDGETPDYAKAVEIVGKEKLGLSFGKKGVEVQYGATGMNQVDGQSTRGLDTNKVNTDTEYRAAYLRLRQYQPDLNRSKITDAMVKKEMKRNG

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0208303_1002485

Overview

Ecosystem & Geography

Associated Families

Sequences