NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208303_1004818

Scaffold Ga0208303_1004818


Overview

Basic Information
Taxon OID3300025543 Open in IMG/M
Scaffold IDGa0208303_1004818 Open in IMG/M
Source Dataset NameFreshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_2 Viral MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4687
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (61.54%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Chesapeake Bay
CoordinatesLat. (o)37.1Long. (o)-76.0972Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F022417Metagenome / Metatranscriptome214N
F027815Metagenome193Y
F050395Metagenome / Metatranscriptome145Y
F081225Metagenome114N

Sequences

Protein IDFamilyRBSSequence
Ga0208303_100481810F022417GGAGGMAQMPKFLEDYTTVDELINKMNTEYPECRLIAEMIGYGDDWVIFKSSFYETKEDTEPKAVAYAKQTSKDHNSWFEMANTKANGRCLRIVFSESTLAEEMIGIAPSKDAAPEKSNLDKKIEVLEAEGLVTDISHKAQAVMNSIKDFAMDCTAQDIDKARLYTASALTELGIRKEDVSITNLQAVKDKIQDISNSEKSA
Ga0208303_100481811F050395AGGAMYPLKRKNKFNWAYKFLYWNGDENIVYLYTIETKEGFQVAESAAWGNATFDGCNKMKYIGKNKMEVENGTNA
Ga0208303_10048183F027815N/AVASLDKDFILPDNLITDNPVFIDTSQEFENDCGDACKI
Ga0208303_10048187F081225N/AMMVGFIGTVVSIVGGDMVNANNRRDFKAEEYDLYDVRKARPFWNQVCEANNWQVIKDEEDFAEDYVCKILNNLYVMELQVVGYWHNFDKDYISNLWISASKVDNLKKKAQAKNTRSGLIFLNCVPNRFIGIDIEEIKESYKVNKASGEKSYKIPLQKIYYLYKELLDRNFCDCLENHIDIMEQGNGRIPMAQRNVNLRGKNGICC
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Biomedical Sciences Research Center "Alexander Fleming"
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