NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208303_1006616

Scaffold Ga0208303_1006616


Overview

Basic Information
Taxon OID3300025543 Open in IMG/M
Scaffold IDGa0208303_1006616 Open in IMG/M
Source Dataset NameFreshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_2 Viral MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3840
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (7.69%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Chesapeake Bay
CoordinatesLat. (o)37.1Long. (o)-76.0972Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004523Metagenome434Y
F007611Metagenome / Metatranscriptome348Y
F014834Metagenome / Metatranscriptome259Y
F082545Metagenome113N

Sequences

Protein IDFamilyRBSSequence
Ga0208303_10066161F004523N/AMDYLSTEIRSAREAITIFKILGIKDVTTDRQRKNGTTVYELPISQVWQTLNPKPIRFATYTTGYVRNVTEGLASSYQINKTKKVSTRTSGYAYDTVERILIHSWEERIIYLAKFIIKNYYRKPTYMMSDYVMKCLREACVRDYNNQPSNRQPFGDEVSFDEGDMHSPDIKVIINGHRYNL
Ga0208303_10066162F014834N/AMKNTNEIEKQLQHKADKYIEQKANEMFAIHEEIAEFCGTSTNFIDYITHFNSYNSAAPENKSNHVAYCDSHNTKKKYRLELELNYKKRLVAKYTKELIAKLEMFE
Ga0208303_10066163F082545N/AMDFTYITVLDFGNGKVYQYNLADVGDNYLFEDKDEPQAEEVEQLLIDQGHELDDCDWMIHADPTINQIKL
Ga0208303_10066166F007611N/AMKRKTITVLDYETSRVYQYKVKINIHSEHFIVFKGHKLSSVEWMEHQISNIITN
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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