Scaffold Ga0208303_1011749

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0208303_1011749

Scaffold Ga0208303_1011749

Overview

Basic Information
Taxon OID	3300025543 Open in IMG/M
Scaffold ID	Ga0208303_1011749 Open in IMG/M
Source Dataset Name	Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_2 Viral MetaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2682
Total Scaffold Genes	9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	7 (77.78%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (100.00%)
Associated Families	3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location Name	USA: Chesapeake Bay
Coordinates	Lat. (^o)	37.1	Long. (^o)	-76.0972	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F035273	Metagenome	172	Y
F046983	Metagenome	150	Y
F085562	Metagenome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208303_10117497	F085562	GAG	MDDFTKKSMEKFDKSTVRAAEKLVDSSSELKKIRSIKDGLTPREITTGANDQQYKDGYDKIEWGKNKSKPSFKIRVNGKIINDEEE
Ga0208303_10117498	F046983	AGGAG	MKIPESWKAESSHKTLGVNTMSLLGLSLLWGHMLNLISLWFLPLTVITLLAGFGNEIRKRDA
Ga0208303_10117499	F035273	GAGG	MKQSYKVWDSQHNSMTEYTPKEVYKIVVDYPKTNRQLEFIGMDRGSCIMQAEVAKEEGDDLMLMKSEESLTLYNKEKV

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