NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209225_1061409

Scaffold Ga0209225_1061409


Overview

Basic Information
Taxon OID3300025546 Open in IMG/M
Scaffold IDGa0209225_1061409 Open in IMG/M
Source Dataset NameSulfidic aquatic microbial communities from Washburn Spring, Yellowstone National Park, USA - WS (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1007
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Alkaline → Unclassified → Sulfidic Aquatic → Saline, Thermophilic Phototrophic And Chemotrophic Mat Microbial Communities From Various Locations In Usa And Mexico

Source Dataset Sampling Location
Location NameWashburn Spring, Yellowstone National Park, Wyoming, USA
CoordinatesLat. (o)44.376Long. (o)-110.69Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F066921Metagenome126N

Sequences

Protein IDFamilyRBSSequence
Ga0209225_10614091F066921N/AMSEEKEETGRGPTPRAAYARAMRAEEKAQKALEELSEIKSALNDLINALKSSHNVLTVPPTPIQAQSLRPGSMIHNVIAEDDEGVTEEIICPTCGTREVRKIPTKIQIREKEVIPDNYIPAPRSISEALQLLESLRLPDGRTVFESDKFWEKLNEIAQKYRPQKGKR
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