Scaffold Ga0210087_1022042

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0210087_1022042

Scaffold Ga0210087_1022042

Overview

Basic Information
Taxon OID	3300025559 Open in IMG/M
Scaffold ID	Ga0210087_1022042 Open in IMG/M
Source Dataset Name	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_CattailB_D2 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1297
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (100.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands → Natural And Restored Wetland Microbial Communities From The San Francisco Bay, California, Usa, That Impact Long-Term Carbon Sequestration

Source Dataset Sampling Location
Location Name	USA: San Francisco Bay, California
Coordinates	Lat. (^o)	38.05241603	Long. (^o)	-121.76907401	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F001379	Metagenome / Metatranscriptome	710	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210087_10220422	F001379	AGGAGG	MSRTTLAVNVAADARRVFEILSTTEGQRGFWTANCDVSGYRARFGFAQAPVDLEVDVTAEPDKLVRMQVTSGFPFWDGSTWEWELGPATRAESGTGIVFRHYGFADGYPETDLGHTAQTWARVLDRLAAYADSGRPRPLFPETS

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