NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209304_1000104

Scaffold Ga0209304_1000104


Overview

Basic Information
Taxon OID3300025577 Open in IMG/M
Scaffold IDGa0209304_1000104 Open in IMG/M
Source Dataset NamePelagic marine microbial communities from North Sea - COGITO_mtgs_100423 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)57857
Total Scaffold Genes83 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)72 (86.75%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameGermany:Helgoland, sampling site Kabeltonne, North Sea
CoordinatesLat. (o)54.1883Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F019393Metagenome230Y
F019910Metagenome227Y
F041144Metagenome160Y
F052872Metagenome142N

Sequences

Protein IDFamilyRBSSequence
Ga0209304_100010414F019393AGGAGGVEYKEIQTYLDADSFIEAHKGLWDMLESKYKKIDEETVVIDNTTWKLMKGSMTCIK
Ga0209304_100010418F019910AGGAGMPNKMSRDINTIPTTDRHIVSYQLYVEWNDSPKLVRLNHDMPSHVANAIDEWFGDIETEENV
Ga0209304_100010420F041144AGGAGMIDDAITTVGFALQSYVNTCIHEDTEENKAEREELEEAWAVIKKKLFKENS
Ga0209304_100010423F052872AGGMNKNFVIAFISQDKDIILEPLAKFNGDVMYFKSSHDARDYIEKLYVNSGVDAVEYDDDGLEIIRVQ
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