Basic Information | |
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Taxon OID | 3300025577 Open in IMG/M |
Scaffold ID | Ga0209304_1000123 Open in IMG/M |
Source Dataset Name | Pelagic marine microbial communities from North Sea - COGITO_mtgs_100423 (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 53734 |
Total Scaffold Genes | 75 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 68 (90.67%) |
Novel Protein Genes | 6 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (66.67%) |
Associated Families | 6 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea |
Source Dataset Sampling Location | ||||||||
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Location Name | Germany:Helgoland, sampling site Kabeltonne, North Sea | |||||||
Coordinates | Lat. (o) | 54.1883 | Long. (o) | 7.9 | Alt. (m) | Depth (m) | 1 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F000375 | Metagenome / Metatranscriptome | 1217 | Y |
F004646 | Metagenome / Metatranscriptome | 429 | Y |
F015716 | Metagenome / Metatranscriptome | 252 | Y |
F016668 | Metagenome / Metatranscriptome | 245 | Y |
F017120 | Metagenome / Metatranscriptome | 242 | Y |
F028770 | Metagenome / Metatranscriptome | 190 | N |
Protein ID | Family | RBS | Sequence |
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Ga0209304_100012330 | F015716 | GGAGG | MSDEGMYFLGGAFAMYVLALPLLYHMVEPEDEEMDNSGPIKFTFLWPLIALEVIYRIFVGEKDNDGTGPN |
Ga0209304_100012332 | F016668 | AGGA | MIPVGQLRLLLTKAGLDFVITRVEGNVAHVNILVAEGSDVHS |
Ga0209304_100012335 | F000375 | GGAG | MPKLYDLEPMIMDCWHVCDDLQVVFRQIGDGEREPTHDEMMNTLMGMQQLYQWKFEQLFFKYEEVLRDRQ |
Ga0209304_100012348 | F004646 | GGAGG | MIYAIADVPHKDYDNYDTLNKLFHAIMPHGWRVSIWKKGELPSLYKKEKHGNICRIFVDYSSTAMRQHPDDSVLSYQCHDAEGCLTFHEVFDNVDKLIIYLTGKV |
Ga0209304_100012357 | F028770 | N/A | VSIGTLGVMMVCMSALAEHCQVLTSPYVFSSVEECQASIVAEARKIKEQYSHATIVPNCVALSYNGEPA |
Ga0209304_100012370 | F017120 | N/A | VSKGLLVMSLKKLVNDKQIWDAFIEELDGCISSTHRSMENISDTAELYRHQGAIKALRQLKYLRDKVNG |
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