NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209304_1013429

Scaffold Ga0209304_1013429


Overview

Basic Information
Taxon OID3300025577 Open in IMG/M
Scaffold IDGa0209304_1013429 Open in IMG/M
Source Dataset NamePelagic marine microbial communities from North Sea - COGITO_mtgs_100423 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2868
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (91.67%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameGermany:Helgoland, sampling site Kabeltonne, North Sea
CoordinatesLat. (o)54.1883Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008925Metagenome326Y
F012581Metagenome279N
F021207Metagenome220Y
F023748Metagenome209Y

Sequences

Protein IDFamilyRBSSequence
Ga0209304_10134291F023748AGGAGGMSEYKYTYRFSEQTVDTRYYKVESNTKLTQSEMQDLAWSVEQTEGETFTCNEGKATYEYEVIGDDAQYQMEGGQEDLADD
Ga0209304_10134292F008925AGGAGMTVKNKLKISQVTLNLINKLKKIDDTINEGAWEYIHLGDIIRLQDAYQEAVNHFDLRKEGGVHDYGADKGKYQQFWHSDYVCWSDPKAYDPSKVEEEDDEXI
Ga0209304_10134294F012581AGGAGMSKYILYAKKVYYYRKEITAQDRKSAEKRGADYEADDNAERLFEPSGEEFYITSIEESDD
Ga0209304_10134296F021207GGAGMSKRFKQVNVQQFAILVQEIDISKYTQEEYVDVVEEIYMTIFRHNTDGDFVVPTMPNEEGTWKIHNKVQTIEQAMEIINERK
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