NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209304_1033025

Scaffold Ga0209304_1033025


Overview

Basic Information
Taxon OID3300025577 Open in IMG/M
Scaffold IDGa0209304_1033025 Open in IMG/M
Source Dataset NamePelagic marine microbial communities from North Sea - COGITO_mtgs_100423 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1499
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameGermany:Helgoland, sampling site Kabeltonne, North Sea
CoordinatesLat. (o)54.1883Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F031255Metagenome / Metatranscriptome183N
F035552Metagenome172N
F077286Metagenome / Metatranscriptome117Y

Sequences

Protein IDFamilyRBSSequence
Ga0209304_10330251F035552GGAGMNIKDDLLISADINNLYWVLGELAEKAKEDNDLIKVLLQLEQFVETHKTRTRDMVTYRDTIERARNEYRSLKLRYDGTVEALNLKTKLLSQVMNEKMDEDVNNQF
Ga0209304_10330253F077286GAGMSKYKYTVEWEGDVANYKQDFDSLEEARMAMIMHHRRNAVIHVIKIDDYA
Ga0209304_10330254F031255N/AQKLRAMVKYFNDVVAELQSKGTIFGAEYRKKNGEVTKINGRFGVSKFVKGTGTSSPNVLTVWDNNRKRYTSLIPDNIVSLNTNKTKYVKTDEFLIESYE
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