Basic Information | |
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Taxon OID | 3300025585 Open in IMG/M |
Scaffold ID | Ga0208546_1000752 Open in IMG/M |
Source Dataset Name | Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_0.19_D_<0.8_DNA (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 10981 |
Total Scaffold Genes | 20 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (20.00%) |
Novel Protein Genes | 6 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (33.33%) |
Associated Families | 6 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Delaware Bay | |||||||
Coordinates | Lat. (o) | 39.283 | Long. (o) | -75.3633 | Alt. (m) | Depth (m) | Location on Map | |
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Family | Category | Number of Sequences | 3D Structure? |
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F001345 | Metagenome / Metatranscriptome | 718 | N |
F003267 | Metagenome / Metatranscriptome | 496 | N |
F006503 | Metagenome / Metatranscriptome | 371 | N |
F008024 | Metagenome / Metatranscriptome | 340 | N |
F025272 | Metagenome / Metatranscriptome | 202 | N |
F044457 | Metagenome / Metatranscriptome | 154 | N |
Protein ID | Family | RBS | Sequence |
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Ga0208546_100075210 | F006503 | GGA | MTNDQFIVAQKHRKYWDQYIASLTMRLPPDAVGELQAILTAHGRPPTNWWCADCVKSALQYIYLQADLFLEVNQNTITHPLNAPANPEG |
Ga0208546_100075216 | F003267 | N/A | MKVIHYYHIYCGGNWQLILNQHMMAVCNYGLINVLDEIRVGIVGPPEQRKAVKEVLEGSMVADKVKVVVTRTNAWEQATLTEMYRASQEEEAVYLYAHTKGAANPSLTTQLWGRSMLFFNVVAWERSMQLLEGVDAVGCHWITKEQFPHMADQNNPEGYPYFGGNFWWSKSSHIKELGEPVRDHRFQAEHWIGKKPDTKVFDSNPGWPSPERFVITF |
Ga0208546_100075218 | F044457 | N/A | MKAKTYIFCHDTDIVKQCEAEGRFRDFFPYTWVMLGFKDFSGMAGLDHIIARDEPDNIESHRNLVAWTGWYALAKNGYIKNGDVVNLFEYDLTKNGDFDQRAYCAYFRVPVDVVPYWSCGDNYEPHIKQLTGRGVKEFYQPVVPVTSNYTLTWDDSYLDLTIACIEQKLVAIPHVGHILERAYSQRFADIPYNVAAFKHAFANSHGF |
Ga0208546_100075220 | F008024 | N/A | MKLQDLTIDQFQRIGAIEFSSVLGDYDKRAGVVAIVEGVDISLVREMPAKSVLKRYKAIISEWNALPALGYKRKFKAGGKW |
Ga0208546_10007528 | F001345 | N/A | VNAESIVLDLYRSGEIRKACLTITGGNPLWKDLEQEVVLILLEKDPDKITKMQVQGYLRFYIVRLIMNLYRGNNNQFAKKYRHHDERVEVDPETQELSKDYDTLLDDLWAIAQQEMDSWAKDGAFPYDKELLNLLMQTGNMKAMSRETGIPYRSIIYSIEQAKAKIKTAIESNGYTGFSNPD |
Ga0208546_10007529 | F025272 | GAG | MDILVFPILISALATLAVVEFRVLPSWFYALPFAKRKPFSCMTCFGFWLGVLLTIPTCQWYLAPILGLASSATAIIIREWTFK |
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