NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208546_1000752

Scaffold Ga0208546_1000752


Overview

Basic Information
Taxon OID3300025585 Open in IMG/M
Scaffold IDGa0208546_1000752 Open in IMG/M
Source Dataset NameAqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_0.19_D_<0.8_DNA (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10981
Total Scaffold Genes20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (20.00%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (33.33%)
Associated Families6

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Delaware Bay
CoordinatesLat. (o)39.283Long. (o)-75.3633Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001345Metagenome / Metatranscriptome718N
F003267Metagenome / Metatranscriptome496N
F006503Metagenome / Metatranscriptome371N
F008024Metagenome / Metatranscriptome340N
F025272Metagenome / Metatranscriptome202N
F044457Metagenome / Metatranscriptome154N

Sequences

Protein IDFamilyRBSSequence
Ga0208546_100075210F006503GGAMTNDQFIVAQKHRKYWDQYIASLTMRLPPDAVGELQAILTAHGRPPTNWWCADCVKSALQYIYLQADLFLEVNQNTITHPLNAPANPEG
Ga0208546_100075216F003267N/AMKVIHYYHIYCGGNWQLILNQHMMAVCNYGLINVLDEIRVGIVGPPEQRKAVKEVLEGSMVADKVKVVVTRTNAWEQATLTEMYRASQEEEAVYLYAHTKGAANPSLTTQLWGRSMLFFNVVAWERSMQLLEGVDAVGCHWITKEQFPHMADQNNPEGYPYFGGNFWWSKSSHIKELGEPVRDHRFQAEHWIGKKPDTKVFDSNPGWPSPERFVITF
Ga0208546_100075218F044457N/AMKAKTYIFCHDTDIVKQCEAEGRFRDFFPYTWVMLGFKDFSGMAGLDHIIARDEPDNIESHRNLVAWTGWYALAKNGYIKNGDVVNLFEYDLTKNGDFDQRAYCAYFRVPVDVVPYWSCGDNYEPHIKQLTGRGVKEFYQPVVPVTSNYTLTWDDSYLDLTIACIEQKLVAIPHVGHILERAYSQRFADIPYNVAAFKHAFANSHGF
Ga0208546_100075220F008024N/AMKLQDLTIDQFQRIGAIEFSSVLGDYDKRAGVVAIVEGVDISLVREMPAKSVLKRYKAIISEWNALPALGYKRKFKAGGKW
Ga0208546_10007528F001345N/AVNAESIVLDLYRSGEIRKACLTITGGNPLWKDLEQEVVLILLEKDPDKITKMQVQGYLRFYIVRLIMNLYRGNNNQFAKKYRHHDERVEVDPETQELSKDYDTLLDDLWAIAQQEMDSWAKDGAFPYDKELLNLLMQTGNMKAMSRETGIPYRSIIYSIEQAKAKIKTAIESNGYTGFSNPD
Ga0208546_10007529F025272GAGMDILVFPILISALATLAVVEFRVLPSWFYALPFAKRKPFSCMTCFGFWLGVLLTIPTCQWYLAPILGLASSATAIIIREWTFK

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