Scaffold Ga0208546

Basic Information
Taxon OID	3300025585 Open in IMG/M
Scaffold ID	Ga0208546_1000978 Open in IMG/M
Source Dataset Name	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_0.19_D_<0.8_DNA (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Ga0208546_1000978 Open in IMG/M

Source Dataset Name

Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_0.19_D_<0.8_DNA (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	9264
Total Scaffold Genes	13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (23.08%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (40.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

9264

Total Scaffold Genes

13 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

3 (23.08%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (40.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location Name	USA: Delaware Bay
Coordinates	Lat. (^o)	39.283	Long. (^o)	-75.3633	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Delaware Bay

Coordinates

Lat. (^o)

39.283

Long. (^o)

-75.3633

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F004112	Metagenome / Metatranscriptome	452	Y
F010155	Metagenome / Metatranscriptome	307	Y
F067666	Metagenome / Metatranscriptome	125	N
F079966	Metagenome / Metatranscriptome	115	Y
F101033	Metagenome / Metatranscriptome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208546_100097810	F079966	N/A	MAEVVTAQGLVLAFTNASGGVYPFACTKDAQISITRDFLELAPRTNGVFREYLQNRTSFSISGSGLVKMVQSNLQPITFFDNFIEGSDQEFVGYLDMIDASGNYKVYQFSCIIQDLSLNSTTSQNAGYSFTLQGTGPLTEITEVDSYTVSSGSITARDPDDYKLVAIGIEGVWYYNYTVTGTTPTFSINIGTSYNGKVVKAVYIAL
Ga0208546_100097811	F101033	N/A	MEANFWLVLGVQTIAFGLGAIRLYTDMKIKIREHDLRLKTLEKKEDETAVQFKEIMQALNEIKLELKDKADKL
Ga0208546_100097812	F067666	AGCAG	MIGELNMKPIKKGDTYVITYSFYEDECEDTPLDVSTYSFKLQAKNTSGTVMIEWLDASFVQIDNHTRKVSLTPVQTATYTAGEYTYELEVTISTNKYTWMQGFVEVQNQVTS
Ga0208546_10009784	F010155	AGG	MKDCSNNVRTIYVNALNGNISYNGKDVPVYGQDPFKTLPKNYVIISSITEQANNTNNTFQNIVQVDIDIFSEQYRINDLSVVDNIAGQILNILIPDSQIDGFSDSDFMVYPMARINSLYLPLRNGDNYVARKIITINNLVNQK
Ga0208546_10009787	F004112	N/A	MLNGHNESKVDQYKLVRLLMFTMVRLMGDPKTAPKTPEQLWELPGDEEISKIDEEEYKEIFKRLAK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0208546_1000978

Overview

Ecosystem & Geography

Associated Families

Sequences