Scaffold Ga0208546

Basic Information
Taxon OID	3300025585 Open in IMG/M
Scaffold ID	Ga0208546_1001390 Open in IMG/M
Source Dataset Name	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_0.19_D_<0.8_DNA (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Ga0208546_1001390 Open in IMG/M

Source Dataset Name

Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_0.19_D_<0.8_DNA (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	7572
Total Scaffold Genes	18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (27.78%)
Novel Protein Genes	9 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	9

Scaffold Components

Scaffold Length (bps)

7572

Total Scaffold Genes

18 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

5 (27.78%)

Novel Protein Genes

9 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

0 (0.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location Name	USA: Delaware Bay
Coordinates	Lat. (^o)	39.283	Long. (^o)	-75.3633	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Delaware Bay

Coordinates

Lat. (^o)

39.283

Long. (^o)

-75.3633

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001018	Metagenome / Metatranscriptome	804	Y
F002333	Metagenome	569	Y
F002738	Metagenome / Metatranscriptome	533	Y
F008128	Metagenome / Metatranscriptome	338	Y
F013517	Metagenome / Metatranscriptome	270	Y
F022401	Metagenome	214	Y
F025982	Metagenome / Metatranscriptome	199	Y
F043890	Metagenome / Metatranscriptome	155	Y
F097198	Metagenome / Metatranscriptome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208546_100139010	F001018	N/A	MTQITQAKLEQLSVLKLYEHYGALERSLPLLTSESQELAKAELEACAHLRSEKVDRIYYAMAAHEDALERVKKEGDLLAQAKRHHESQLRSLKNLLNYLRRVLPLDSNKITGRNYQFTLVRKKELTVEVTSDPEFWHTAERELYCIEETVTTTKQVVVRSMSGEVLSSRTEPKTVTKILPNLDAIRSAYQEGRQLPTGVKVVQEYAVRSKRIFTEPRVDLVSSEYPDELLREDSSASES
Ga0208546_100139011	F013517	N/A	MFESLFAAVLPVMKELLWAAAGMALTFVMTKLSHGWT
Ga0208546_100139012	F002738	N/A	MLVTAMSIDTYGLPSEQYVKFFKDNVRFAARLYLDTCNILSAEGAGNVDFKTVLDMYQEAVYQTNDDCRRYQKANNPEAIKDTDLLGIYPSREEMMEEIKLVSAKVEALTEYVTELVKVTTKGLEGIAGNLVD
Ga0208546_100139013	F043890	N/A	MQKTSSWATCNPNSIEKLQINCIDEEDGSMTIHIEWDENDFDLQWWTDLGEEGQKAFMIKALTDACDCYVD
Ga0208546_100139015	F002333	N/A	MSTQTQLELNAAQAAIYTRSNIRRAFQDFDDTEVAGIYLRDDDCLVVRRDGSEQTYNRELIKVAFANYTHRLKDFFSYLGSNYRGPSVWHNNAYILFKGWNYTHALGHLTSNAKLQAHWADKFIHVPDTNKVLHLLQSDQTDLGHLVAPDGLRLSNRPIDLDSDMEADQSTPVMGEPWCSCGSYQRQLSNLSDFASEIQGFKPWCIHLSWFNKYRELLCKRTEARNASPSGTPEKCVAWWYAPPVDHISDGRFVLLYTNSGAQAPLTHWRTYKPKEVFTQHDAWDLFFNMMEAGYVPFPGTSLPQLKSALKKQ
Ga0208546_100139017	F097198	N/A	MLQFEMGPEEAFWQEKMIRSINECSSISELKEMAILLTKIATMRQVAIKGLVKDAMDLMSNQVDRDILNRLKG
Ga0208546_10013904	F022401	N/A	MDHPHEPIDAIKTWQDWYKSHRIVAQLDKPLITKDSRENMHDTTHATDPFKESDTKAMWMQKAKEHFADTLAEYQYELSGKDFYKAFYQAAYEYLEATQKEYERTKELVDMLRYKELGQD
Ga0208546_10013906	F008128	N/A	MEAVSVPTITLSFAVDVEISYNSFDGKTTEDIAYALQDELHDLLFELDQVTGVYTVCTSINSND
Ga0208546_10013909	F025982	N/A	MDCHLHAVKDFELQLEMNKLQIDMVKDGGEVAPYCMDEYEDLEQKKLKLLVGKRFHQNASNAYWYYLQKEKTNK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0208546_1001390

Overview

Ecosystem & Geography

Associated Families

Sequences