NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208546_1002939

Scaffold Ga0208546_1002939


Overview

Basic Information
Taxon OID3300025585 Open in IMG/M
Scaffold IDGa0208546_1002939 Open in IMG/M
Source Dataset NameAqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_0.19_D_<0.8_DNA (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5005
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (47.06%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Associated Families6

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Delaware Bay
CoordinatesLat. (o)39.283Long. (o)-75.3633Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000744Metagenome / Metatranscriptome909Y
F004898Metagenome / Metatranscriptome419Y
F027765Metagenome / Metatranscriptome193Y
F041726Metagenome / Metatranscriptome159Y
F048268Metagenome / Metatranscriptome148Y
F082390Metagenome / Metatranscriptome113Y

Sequences

Protein IDFamilyRBSSequence
Ga0208546_100293912F000744GGAMKEVNVNLNVHEIGVILSALQELNLREENRIAREYGSVPALYAKLHDFWEQMDTSETGLRNDVVPSF
Ga0208546_100293913F082390GGAMFTVNLTEQQLALMEKIVGEKFDEVAQAWLPAEETKAMNNLCYSTMLNLRCVRLAKEYDETYAKWDSEFYSFDKEQYLKDVGLVTDEQLAQQGVC
Ga0208546_100293916F027765N/AMNDEDIRQFMNAFEDFTKHAEVEEFNHSAWTSARQYTDHFYEQKAAELEVTVDYMMAEFMID
Ga0208546_10029394F004898GAGGMDLSELIEELREIEIYGSEPSDWMGYLGSDDYWVPDEELAY
Ga0208546_10029397F041726AGGMKTYRMLIEYWVPDEDENIFEEKIIQSRSSCGKIADDYLAQDRTNLIRSVEVTPV
Ga0208546_10029398F048268N/AMQLSTQSVSKIADALKPSVIDYIYEDEGFVEYMQTAIVDGIRETMGNMDDDLLFELGMLIFDRIELK
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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