NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209409_1019414

Scaffold Ga0209409_1019414


Overview

Basic Information
Taxon OID3300025589 Open in IMG/M
Scaffold IDGa0209409_1019414 Open in IMG/M
Source Dataset NameActive sludge microbial communities of municipal wastewater-treating anaerobic digesters from Japan - AD_JPNMR1_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2514
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Source Dataset Sampling Location
Location NameJapan
CoordinatesLat. (o)36.29Long. (o)139.38Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F079955Metagenome / Metatranscriptome115N

Sequences

Protein IDFamilyRBSSequence
Ga0209409_10194142F079955GGAGGMRTGRENLKELVAIEMGKGISRGFARAEGWLTASVDHYAEGSFVGFILGMHLIDVLSETAFKALEGALDDLVDELEMFCLEREKENGKEYVYYHEAMRIARDMVGAVREEFMSQRQKLNEIEDLIYYDWTFANMGLETKEKAIRHFVCRELDTILYMKVYTEFTDAVDRVIRRLEGGH
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