NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209094_1000433

Scaffold Ga0209094_1000433


Overview

Basic Information
Taxon OID3300025594 Open in IMG/M
Scaffold IDGa0209094_1000433 Open in IMG/M
Source Dataset NamePelagic marine microbial communities from North Sea - COGITO_mtgs_100430 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)31013
Total Scaffold Genes45 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)41 (91.11%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameGermany:Helgoland, sampling site Kabeltonne, North Sea
CoordinatesLat. (o)54.1883Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F028321Metagenome / Metatranscriptome192Y
F047315Metagenome / Metatranscriptome150N

Sequences

Protein IDFamilyRBSSequence
Ga0209094_100043328F028321AGGAGGMLMEIAAANAIWKTLSTALKNGQQLYQMSTALGEYLSATQKVKDKAGDASSRGSALECFQYQEQLRIQREQLEFHLKKSRLNGWSDFVKFEAEWHRQRRAEEQEKVNERIRRNAKLQKDLELATNIGICMILAMGLLFGIAVYMKG
Ga0209094_100043329F047315AGGMSNMTDYDAGRFVTLVETLTTQVESLNETTVILSNRINDLEKQLVKGKGFLAGAMLLSIGLGGVGTSVLSKWMGT

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