Scaffold Ga0209094_1033757

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold Ga0209094_1033757

Scaffold Ga0209094_1033757

Overview

Basic Information
Taxon OID	3300025594 Open in IMG/M
Scaffold ID	Ga0209094_1033757 Open in IMG/M
Source Dataset Name	Pelagic marine microbial communities from North Sea - COGITO_mtgs_100430 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1453
Total Scaffold Genes	7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	6 (85.71%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (100.00%)
Associated Families	3

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location Name	Germany:Helgoland, sampling site Kabeltonne, North Sea
Coordinates	Lat. (^o)	54.1883	Long. (^o)	7.9	Alt. (m)		Depth (m)	1
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008925	Metagenome	326	Y
F023748	Metagenome	209	Y
F029779	Metagenome	187	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209094_10337572	F029779	AGGAG	MMSDKEKYEELCEALAGIDATERYTHEDILSYIYNLKDTEEKFYDNKN
Ga0209094_10337573	F008925	AGGAG	MTTKTKPTIDAVTLNLINKLKKIEDTINEGAWEYIHLGDIIRLQDASQEAISHFDLRKEGGIHDYGADKGKYQQFYHSDYVCHTDPKAFDPSKVEEEDDEXI
Ga0209094_10337574	F023748	AGGAGG	MSEYKYIYRFNEQTVDTRYYKVESNTKLTRSEMQDLAWSVEQTDGKTFTCNEGKATFEGTDYGDDAQYEIEKGKEDLLDGDDYDWS

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.