NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208825_1012533

Scaffold Ga0208825_1012533


Overview

Basic Information
Taxon OID3300025597 Open in IMG/M
Scaffold IDGa0208825_1012533 Open in IMG/M
Source Dataset NameActive sludge microbial communities of municipal wastewater-treating anaerobic digesters from Hong Kong - AD_UKC113_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3418
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → unclassified Eubacteriales → Clostridiales bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Source Dataset Sampling Location
Location NameHong Kong
CoordinatesLat. (o)22.28Long. (o)114.17Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016798Metagenome / Metatranscriptome244Y
F068738Metagenome / Metatranscriptome124Y

Sequences

Protein IDFamilyRBSSequence
Ga0208825_10125335F016798AGGAGMKKFILILLLLVLVSCEKEFKELQRSYVISNFIELNDDLDYKLIYFCDKYNAFEHFYDIKGTIFNEIGEHNYYKNSQERMSIVSFTKDTGTCQFQHRTFYYLAGKYNIKNANILSESQQIAIMVQAFRDDKKNYWNGYKKLKKILVE
Ga0208825_10125336F068738N/AIDSVYVYNYDDYVSFYDTLLHTNIQKSDTFICFDSISVQKLTIKLVNCSLDSELLANCLIQNNLYTNIINIQDSVISLKDSVNASLEDMYKQKVKKVKRHRNVATGIAFIEFLILIGVLA
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