NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208768_1013300

Scaffold Ga0208768_1013300


Overview

Basic Information
Taxon OID3300025601 Open in IMG/M
Scaffold IDGa0208768_1013300 Open in IMG/M
Source Dataset NameSaline lake microbial communities from Ace Lake, Antarctica - Antarctic Ace Lake Metagenome 02UK1 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2561
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameAce Lake, Antarctica
CoordinatesLat. (o)-68.4725Long. (o)78.188Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F052207Metagenome143Y
F061579Metagenome131Y

Sequences

Protein IDFamilyRBSSequence
Ga0208768_10133002F061579N/AMNITLDLSKGQLSKLRNGHGIRITPTMLGSGVEMIIDPMTYHNISKKMERGKGIVIKMGSNEIEMNKMEGTGLFAGAGNQSGKISRVKKAGKWTGYVNDTARMGIDTAAYGYKEYQKAKNPIGSKVKSWFGGGDMEGGKISMSAIKQSYNKNVKNTKLGKALKETAGNAFGDVYDKGTEMIGNTRHLGGVADALKKGKKGNISKLTQLSGLGLKLQGEGMTDARYRRPITMGNGMRMGGGACHSCNGSGMNDKFLFSDQAL
Ga0208768_10133003F052207N/AEWLSINDTTTQYDQGTSIIETTALSNNSKFLDYNSGYLSVPLLVTLTSNASAITGIADTDTLPYTKSVGFKQSFLSMINSITVDLNGQPMVQQNQLIDMYNHFRLLTSESWNTQNRWSSIGFYPDVAESAGFSTAKSIYAPAGQSANNDTLNVGLAERLGYILDDAGETFSGVATSPLSNLISKTELAKLYVSHVSNLTAGTAGSKSPVVQYSVKATIMLKDIHPLFEVMPISKSLNFKIQIFWNNSVVTATHDGTDWTAQSSQYRAYNGTLPLMLNNFTDGFAGSSAGTLRASVYVGDTCHDSTQKTVTNNGLSTGGVGKQVELWVPAYQMLPDVEMSYAQNHLRDISYYDYYQYGLKNIGSGESFNHLVSNGISNLKAVLIIPQLNTLNNNVNAFDDGLPQLMGHINNFNVLVGGSNVLHQDSRYTYQQFNNEFFHEFGINGNQSSGLGSSLIDFKGWLKKPYYYVNCSRVPLEQQSAYRSLQIKGTNSSSLAVDYVIFAIYSKSFSLDVISGNITKTD
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